PQI

Verticillium dahliae VdLs.17

Taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetes incertae sedis; Phyllachorales; mitosporic Phyllachorales; Verticillium

Source: Broad Institute

Compared to

PQI Score
User Score (2 votes)

Voting

Click on the stars to rate this proteome.

Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
CEG Domain Combination Homology 0.5201 0.520129 0.738525
Percent of Sequences covered 39.0000 0.313210 0.879281
Number of Superfamilies 894.0000 0.022541 0.992977
Average Sequence Length 473.0000 0.985819 0.550142
Average hit length 316.0000 0.280619 0.884247
Number of Families 687.0000 0.113828 0.966123
Number of Unique Architectures 2201.0000 0.096421 0.971119
Percent with Assignment 58.0000 0.434706 0.819257
Percent of sequences in Uniprot 99.9900 99.990000 0.992240
DOGMA 93.7500 93.750000 0.835889
comments powered by Disqus

DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)