PQI

Burkholderia sp. KJ006

Taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 66.0000 0.163158 0.940560
Number of Superfamilies 810.0000 0.217697 0.929941
Average Sequence Length 307.0000 0.530682 0.768540
Average hit length 306.0000 0.297075 0.877381
Number of Families 720.0000 0.055858 0.983050
Number of Unique Architectures 1406.0000 0.095896 0.971289
Percent with Assignment 67.0000 0.112655 0.960436
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 99.6600 99.660000 0.995116
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)