PQI

Haemophilus parasuis SH0165

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus parasuis

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 4.0000 4.000000 0.711784
Percent of Sequences covered 66.0000 0.097255 0.964429
Number of Superfamilies 625.0000 0.044815 0.986020
Average Sequence Length 296.0000 0.497163 0.784699
Average hit length 282.0000 0.934541 0.599952
Number of Families 587.0000 0.365000 0.879102
Number of Unique Architectures 790.0000 0.258452 0.918033
Percent with Assignment 69.0000 0.207095 0.922038
Percent of sequences in Uniprot 99.9500 99.950000 0.971280
DOGMA 96.5800 96.580000 0.889129
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)