PQI

Neisseria lactamica 020-06

Taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria lactamica

Source: NCBI

Compared to

Neisseria meningitidis WUE 2594 • Neisseria meningitidis G2136 • Neisseria meningitidis M04-240196 • Neisseria meningitidis M01-240149 • Neisseria meningitidis NZ-05/33 • Neisseria meningitidis M01-240355 • Neisseria meningitidis 8013 • Neisseria meningitidis 053442 • Neisseria meningitidis Z2491 • Neisseria meningitidis H44/76 • Neisseria meningitidis alpha710 • Neisseria meningitidis MC58 • Neisseria gonorrhoeae TCDC-NG08107 • Neisseria gonorrhoeae FA 1090 • Candidatus Nasuia deltocephalinicola str. NAS-ALF • Candidatus Tremblaya phenacola PAVE • Candidatus Tremblaya princeps PCVAL • Candidatus Kinetoplastibacterium oncopeltii TCC290E • Candidatus Kinetoplastibacterium galatii TCC219 • Candidatus Kinetoplastibacterium desouzaii TCC079E • Kinetoplastibacterium blastocrithidii Candidatus (ex Strigomonas culicis) • Kinetoplastibacterium blastocrithidii Candidatus TCC012E • Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC 30255) • Candidatus Kinetoplastibacterium crithidii TCC036E • Nitrosomonas sp. AL212 • Sulfuricella denitrificans skB26 • Dechloromonas aromatica RCB • Thauera sp. MZ1T • Azoarcus sp. KH32C • Azoarcus sp. BH72 • Aromatoleum aromaticum EbN1 • Dechlorosoma suillum PS • Pseudogulbenkiania sp. NH8B • Laribacter hongkongensis HLHK9 • Chromobacterium violaceum ATCC 12472 • Neisseria meningitidis alpha14 • Neisseria meningitidis FAM18 • Neisseria gonorrhoeae NCCP11945 • syncytium symbiont of Diaphorina citri • Candidatus Accumulibacter phosphatis clade IIA str. UW-1 • Candidatus Tremblaya princeps PCIT • beta proteobacterium CB • Thiobacillus denitrificans ATCC 25259 • Nitrosospira multiformis ATCC 25196 • Nitrosomonas sp. Is79A3 • Nitrosomonas eutropha C91 • Nitrosomonas europaea ATCC 19718 • Sideroxydans lithotrophicus ES-1 • Gallionella capsiferriformans ES-2 • Methylotenera versatilis 301 • Methylotenera mobilis JLW8 • Methylovorus sp. MP688 • Methylovorus glucosetrophus SIP3-4 • Methylobacillus flagellatus KT
PQI Score
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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 3.0000 3.000000 0.654145
Percent of Sequences covered 63.0000 0.412630 0.840165
Number of Superfamilies 625.0000 0.119207 0.963248
Average Sequence Length 309.0000 0.057029 0.979482
Average hit length 289.0000 0.213557 0.916411
Number of Families 500.0000 0.134850 0.959562
Number of Unique Architectures 779.0000 0.471218 0.836401
Percent with Assignment 67.0000 0.332430 0.866580
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 100.0000 100.000000 1.000000
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)