PQI

Erythrobacter litoralis HTCC2594

Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter; Erythrobacter litoralis

Source: NCBI

Compared to

Caulobacter crescentus CB15 • Zymomonas mobilis subsp. mobilis ATCC 29191 • Zymomonas mobilis subsp. mobilis CP4 • Zymomonas mobilis subsp. mobilis ATCC 10988 • Zymomonas mobilis subsp. mobilis ZM4 • Zymomonas mobilis subsp. pomaceae ATCC 29192 • Wolbachia endosymbiont of Drosophila melanogaster • Wolbachia endosymbiont of Onchocerca ochengi str. Adamawa_Cameroon • Wolbachia endosymbiont strain TRS of Brugia malayi • Wolbachia endosymbiont of Drosophila simulans wHa • Wolbachia endosymbiont of Drosophila simulans wNo • Ehrlichia muris AS145 • Ehrlichia ruminantium str. Welgevonden • Anaplasma phagocytophilum str. Dog2 • Anaplasma phagocytophilum str. HZ2 • Anaplasma phagocytophilum str. JM • Anaplasma marginale str. Dawn • Anaplasma marginale str. Gypsy Plains • Anaplasma marginale str. St. Maries • Orientia tsutsugamushi str. Ikeda • Rickettsia bellii RML369-C • Rickettsia canadensis str. CA410 • Rickettsia typhi str. B9991CWPP • Rickettsia typhi str. TH1527 • Rickettsia prowazekii str. Breinl • Rickettsia prowazekii str. NMRC Madrid E • Rickettsia prowazekii str. RpGvF24 • Rickettsia prowazekii str. GvV257 • Rickettsia prowazekii str. Dachau • Rickettsia prowazekii str. Katsinyian • Rickettsia prowazekii str. Chernikova • Rickettsia prowazekii Rp22 • Rickettsia prowazekii str. Madrid E • Rickettsia slovaca str. D-CWPP • Rickettsia massiliae str. AZT80 • Rickettsia rickettsii str. Arizona • Rickettsia rickettsii str. Brazil • Rickettsia rickettsii str. Hauke • Rickettsia rickettsii str. Colombia • Rickettsia rickettsii str. Hlp#2 • Rickettsia rickettsii str. Hino • Rickettsia rickettsii str. Iowa • Parvularcula bermudensis HTCC2503 • Asticcacaulis excentricus CB 48 • Brevundimonas subvibrioides ATCC 15264 • Caulobacter sp. K31 • Caulobacter crescentus NA1000 • Caulobacter segnis ATCC 21756 • Phenylobacterium zucineum HLK1 • Sphingopyxis alaskensis RB2256 • Novosphingobium sp. PP1Y • Novosphingobium aromaticivorans DSM 12444 • Sphingobium sp. SYK-6 • Sphingobium japonicum UT26S • Sphingobium chlorophenolicum L-1 • Sphingomonas sp. MM-1 • Sphingomonas wittichii RW1 • Zymomonas mobilis subsp. mobilis NCIMB 11163 • Candidatus Midichloria mitochondrii IricVA • Neorickettsia sennetsu str. Miyayama • Neorickettsia risticii str. Illinois • Wolbachia endosymbiont of Culex quinquefasciatus Pel • Wolbachia sp. wRi • Ehrlichia chaffeensis str. Arkansas • Ehrlichia canis str. Jake • Ehrlichia ruminantium str. Gardel • Anaplasma phagocytophilum HZ • Anaplasma marginale str. Florida • Anaplasma centrale str. Israel • Orientia tsutsugamushi str. Boryong • Rickettsia bellii OSU 85-389 • Rickettsia canadensis str. McKiel • Rickettsia typhi str. Wilmington • Rickettsia prowazekii str. BuV67-CWPP • Rickettsia philipii str. 364D • Rickettsia heilongjiangensis 054 • Rickettsia peacockii str. Rustic • Rickettsia felis URRWXCal2 • Rickettsia slovaca 13-B • Rickettsia parkeri str. Portsmouth • Rickettsia massiliae MTU5 • Rickettsia japonica YH • Rickettsia africae ESF-5 • Rickettsia rhipicephali str. 3-7-female6-CWPP • Rickettsia montanensis str. OSU 85-930 • Candidatus Rickettsia amblyommii str. GAT-30V • Rickettsia australis str. Cutlack • Rickettsia akari str. Hartford • Rickettsia rickettsii str. 'Sheila Smith' • Rickettsia conorii str. Malish 7
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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 3.0000 3.000000 0.654145
Percent of Sequences covered 62.0000 0.225752 0.914065
Number of Superfamilies 663.0000 0.670475 0.757897
Average Sequence Length 309.0000 0.021477 0.992281
Average hit length 293.0000 0.163943 0.934847
Number of Families 467.0000 0.550451 0.800660
Number of Unique Architectures 945.0000 0.498759 0.822133
Percent with Assignment 66.0000 0.096731 0.965765
Percent of sequences in Uniprot 99.6100 99.610000 0.934872
DOGMA 95.8900 95.890000 0.871372
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)