PQI

Clostridium ljungdahlii DSM 13528

Taxonomy: Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium ljungdahlii

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 62.0000 0.075317 0.973216
Number of Superfamilies 713.0000 0.317083 0.895735
Average Sequence Length 310.0000 0.171409 0.934991
Average hit length 285.0000 0.601025 0.741896
Number of Families 498.0000 0.025643 0.992554
Number of Unique Architectures 1100.0000 0.184744 0.942250
Percent with Assignment 67.0000 0.288272 0.884694
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 94.8600 94.860000 0.853429
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)