PQI

Acetohalobium arabaticum DSM 5501

Taxonomy: Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Acetohalobium; Acetohalobium arabaticum

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 64.0000 0.467859 0.816969
Number of Superfamilies 632.0000 0.159867 0.949810
Average Sequence Length 309.0000 0.005116 0.998298
Average hit length 288.0000 0.264820 0.891176
Number of Families 458.0000 0.218796 0.932812
Number of Unique Architectures 870.0000 0.019497 0.994382
Percent with Assignment 69.0000 0.164843 0.939860
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 89.2100 89.210000 0.764602
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)