PQI

Anabaena sp. 90

Taxonomy: Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=46234

Compared to

Chamaesiphon minutus PCC 6605 • Synechocystis sp. PCC 6803 substr. PCC-P • Synechocystis sp. PCC 6803 substr. PCC-N • Synechocystis sp. PCC 6803 substr. GT-I • Cyanobium gracile PCC 6307 • Dactylococcopsis salina PCC 8305 • Synechococcus sp. JA-2-3B'a(2-13) • Synechococcus sp. JA-3-3Ab • Synechococcus sp. CC9902 • Synechococcus sp. RCC307 • Synechococcus sp. CC9605 • Synechococcus sp. WH 8102 • Synechococcus sp. WH 7803 • Synechococcus sp. PCC 7002 • Synechococcus elongatus PCC 6301 • Crinalium epipsammum PCC 9333 • Oscillatoria nigro-viridis PCC 7112 • Oscillatoria acuminata PCC 6304 • Arthrospira platensis NIES-39 • Cyanothece sp. PCC 7822 • Cyanothece sp. PCC 7425 • Cyanothece sp. PCC 7424 • Cyanothece sp. ATCC 51142 • Cyanothece sp. PCC 8801 • Cyanobacterium aponinum PCC 10605 • Cyanobacterium stanieri PCC 7202 • Calothrix parietina Calothrix sp. PCC 6303 • Cylindrospermum stagnale PCC 7417 • Anabaena cylindrica PCC 7122 • Leptolyngbya sp. PCC 7376 • Pseudanabaena sp. PCC 7367 • Acaryochloris marina MBIC11017 • Synechocystis sp. PCC 6803 • Thermosynechococcus sp. NK55 • Thermosynechococcus elongatus BP-1 • Synechococcus sp. PCC 7502 • Synechococcus sp. PCC 6312 • Synechococcus sp. CC9311 • Synechococcus elongatus PCC 7942 • Microcoleus sp. PCC 7113 • Trichodesmium erythraeum IMS101 • Geitlerinema sp. PCC 7407 • Cyanothece sp. PCC 8802 • Gloeocapsa sp. PCC 7428 • cyanobacterium UCYN-A • Halothece sp. PCC 7418 • Microcystis aeruginosa NIES-843 • Rivularia sp. PCC 7116 • Calothrix sp. PCC 7507 • Anabaena variabilis ATCC 29413 • 'Nostoc azollae' 0708 • Nostoc sp. PCC 7107 • Nostoc punctiforme PCC 73102 • Nostoc sp. PCC 7120 • Nostoc sp. PCC 7524
PQI Score
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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 58.0000 0.296612 0.885381
Number of Superfamilies 726.0000 0.099252 0.969240
Average Sequence Length 312.0000 0.116534 0.956250
Average hit length 304.0000 0.004806 0.998136
Number of Families 507.0000 0.178859 0.945448
Number of Unique Architectures 1203.0000 0.055444 0.983409
Percent with Assignment 59.0000 0.379741 0.845493
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 100.0000 100.000000 1.000000
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)