PQI

Gloeobacter kilaueensis Gloeobacter sp. JS

Taxonomy: Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter; Gloeobacter kilaueensis

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1183438

Compared to

Chroococcidiopsis thermalis PCC 7203 • Chamaesiphon minutus PCC 6605 • Synechocystis sp. PCC 6803 substr. PCC-P • Synechocystis sp. PCC 6803 substr. PCC-N • Synechocystis sp. PCC 6803 substr. GT-I • Cyanobium gracile PCC 6307 • Dactylococcopsis salina PCC 8305 • Synechococcus sp. JA-2-3B'a(2-13) • Synechococcus sp. JA-3-3Ab • Synechococcus sp. CC9902 • Synechococcus sp. RCC307 • Synechococcus sp. CC9605 • Synechococcus sp. WH 8102 • Synechococcus sp. WH 7803 • Synechococcus sp. PCC 7002 • Synechococcus elongatus PCC 6301 • Prochlorococcus marinus str. NATL1A • Prochlorococcus marinus str. MIT 9301 • Prochlorococcus marinus str. AS9601 • Prochlorococcus marinus subsp. marinus str. CCMP1375 • Prochlorococcus marinus subsp. pastoris str. CCMP1986 • Prochlorococcus marinus str. MIT 9215 • Prochlorococcus marinus str. MIT 9211 • Prochlorococcus marinus str. MIT 9313 • Prochlorococcus marinus str. MIT 9312 • Prochlorococcus marinus str. MIT 9303 • Prochlorococcus marinus str. NATL2A • Crinalium epipsammum PCC 9333 • Oscillatoria nigro-viridis PCC 7112 • Oscillatoria acuminata PCC 6304 • Arthrospira platensis NIES-39 • Cyanothece sp. PCC 7822 • Cyanothece sp. PCC 7425 • Cyanothece sp. PCC 7424 • Cyanothece sp. ATCC 51142 • Cyanothece sp. PCC 8801 • Cyanobacterium aponinum PCC 10605 • Cyanobacterium stanieri PCC 7202 • Pleurocapsa minor Pleurocapsa sp. PCC 7327 • Stanieria cyanosphaera PCC 7437 • Calothrix parietina Calothrix sp. PCC 6303 • Cylindrospermum stagnale PCC 7417 • Anabaena cylindrica PCC 7122 • Leptolyngbya sp. PCC 7376 • Pseudanabaena sp. PCC 7367 • Acaryochloris marina MBIC11017 • Synechocystis sp. PCC 6803 • Thermosynechococcus sp. NK55 • Thermosynechococcus elongatus BP-1 • Synechococcus sp. PCC 7502 • Synechococcus sp. PCC 6312 • Synechococcus sp. CC9311 • Synechococcus elongatus PCC 7942 • Prochlorococcus marinus str. MIT 9515 • Microcoleus sp. PCC 7113 • Trichodesmium erythraeum IMS101 • Geitlerinema sp. PCC 7407 • Cyanothece sp. PCC 8802 • Gloeocapsa sp. PCC 7428 • cyanobacterium UCYN-A • Halothece sp. PCC 7418 • Microcystis aeruginosa NIES-843 • Gloeobacter violaceus PCC 7421 • Rivularia sp. PCC 7116 • Calothrix sp. PCC 7507 • Anabaena variabilis ATCC 29413 • 'Nostoc azollae' 0708 • Nostoc sp. PCC 7107 • Nostoc punctiforme PCC 73102 • Nostoc sp. PCC 7120 • Nostoc sp. PCC 7524 • Anabaena sp. 90
PQI Score
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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 60.0000 0.076480 0.972439
Number of Superfamilies 723.0000 0.175073 0.944747
Average Sequence Length 315.0000 0.172359 0.934620
Average hit length 302.0000 0.060423 0.976410
Number of Families 503.0000 0.218669 0.932976
Number of Unique Architectures 1201.0000 0.070830 0.978853
Percent with Assignment 62.0000 0.167724 0.938764
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 97.7700 97.770000 0.927080
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)