PQI

Thermococcus litoralis DSM 5473

Taxonomy: Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus litoralis

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=523849

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0029 0.002865 0.795976
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 60.0000 0.733040 0.695834
Number of Superfamilies 543.0000 2.480439 0.302638
Average Sequence Length 265.0000 2.283952 0.194383
Average hit length 261.0000 2.135632 0.260735
Number of Families 395.0000 1.816740 0.374690
Number of Unique Architectures 729.0000 2.085151 0.308358
Percent with Assignment 61.0000 1.709398 0.301493
Percent of sequences in Uniprot 99.9600 99.960000 0.975192
DOGMA 97.9000 97.900000 0.932853
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)