PQI

Pseudomonas putida W619

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas putida

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 1.0000 1.000000 0.295321
Percent of Sequences covered 65.0000 0.048700 0.984108
Number of Superfamilies 810.0000 0.213275 0.931573
Average Sequence Length 329.0000 0.200795 0.922602
Average hit length 305.0000 0.163091 0.935456
Number of Families 775.0000 0.424165 0.856093
Number of Unique Architectures 1364.0000 0.159384 0.950488
Percent with Assignment 70.0000 0.155070 0.944339
Percent of sequences in Uniprot 99.9700 99.970000 0.979928
DOGMA 99.6600 99.660000 0.995116
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)