PQI

Mycobacterium abscessus ATCC 19977

Taxonomy: Bacteria; Actinobacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium chelonae group; Mycobacterium abscessus subgroup; Mycobacterium abscessus

Source: NCBI

Compared to

Mycobacterium tuberculosis H37Rv • Mycobacterium sp. MOTT36Y • Mycobacterium sp. JDM601 • Mycobacterium abscessus subsp. bolletii 50594 • Mycobacterium liflandii 128FXT • Mycobacterium sp. KMS • Mycobacterium sp. MCS • Mycobacterium yongonense 05-1390 • Mycobacterium intracellulare MOTT-64 • Mycobacterium indicus pranii MTCC 9506 • Mycobacterium intracellulare MOTT-02 • Mycobacterium avium subsp. paratuberculosis MAP4 • Mycobacterium avium subsp. paratuberculosis K-10 • Mycobacterium canettii CIPT 140070017 • Mycobacterium canettii CIPT 140060008 • Mycobacterium canettii CIPT 140070008 • Mycobacterium canettii CIPT 140070010 • Mycobacterium tuberculosis EAI5/NITR206 • Mycobacterium tuberculosis EAI5 • Mycobacterium tuberculosis CAS/NITR204 • Mycobacterium tuberculosis str. Beijing/NITR203 • Mycobacterium tuberculosis UT205 • Mycobacterium tuberculosis RGTB423 • Mycobacterium tuberculosis RGTB327 • Mycobacterium tuberculosis CTRI-2 • Mycobacterium tuberculosis str. Erdman = ATCC 35801 • Mycobacterium tuberculosis KZN 605 • Mycobacterium tuberculosis KZN 4207 • Mycobacterium tuberculosis CCDC5180 • Mycobacterium tuberculosis CCDC5079 • Mycobacterium tuberculosis H37Ra • Mycobacterium tuberculosis str. Haarlem/NITR202 • Mycobacterium tuberculosis str. Haarlem • Mycobacterium tuberculosis F11 • Mycobacterium tuberculosis CDC1551 • Mycobacterium bovis AF2122/97 • Mycobacterium bovis BCG str. Korea 1168P • Mycobacterium bovis BCG str. Mexico • Mycobacterium bovis BCG str. Tokyo 172 • Mycobacterium gilvum Spyr1 • Mycobacterium leprae TN • Mycobacterium kansasii ATCC 12478 • Mycobacterium smegmatis JS623 • Mycobacterium massiliense str. GO 06 • Mycobacterium sp. JLS • Mycobacterium intracellulare ATCC 13950 • Mycobacterium avium 104 • Mycobacterium vanbaalenii PYR-1 • Mycobacterium canettii CIPT 140010059 • Mycobacterium africanum GM041182 • Mycobacterium tuberculosis KZN 1435 • Mycobacterium tuberculosis • Mycobacterium bovis BCG str. Pasteur 1173P2 • Mycobacterium rhodesiae NBB3 • Mycobacterium ulcerans Agy99 • Mycobacterium gilvum PYR-GCK • Mycobacterium chubuense NBB4 • Mycobacterium marinum M • Mycobacterium smegmatis str. MC2 155 • Mycobacterium leprae Br4923
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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 63.0000 0.135251 0.949830
Number of Superfamilies 669.0000 0.325060 0.892427
Average Sequence Length 317.0000 0.068039 0.975575
Average hit length 298.0000 0.364649 0.849632
Number of Families 491.0000 0.261817 0.918279
Number of Unique Architectures 1111.0000 0.142722 0.956060
Percent with Assignment 67.0000 0.413591 0.829380
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 98.1200 98.120000 0.942358
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)