PQI

Lactobacillus johnsonii FI9785

Taxonomy: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus johnsonii

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 4.0000 4.000000 0.711784
Percent of Sequences covered 63.0000 0.257385 0.901593
Number of Superfamilies 498.0000 0.245034 0.919957
Average Sequence Length 302.0000 0.324955 0.867518
Average hit length 283.0000 0.335959 0.860515
Number of Families 327.0000 0.081653 0.975626
Number of Unique Architectures 608.0000 0.151629 0.953026
Percent with Assignment 68.0000 0.082629 0.970495
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 83.2200 83.220000 0.699776
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)