PQI

Streptomyces collinus Tu 365

Taxonomy: Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces; Streptomyces collinus

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1214242

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 4.0000 4.000000 0.711784
Percent of Sequences covered 64.0000 0.501789 0.800222
Number of Superfamilies 770.0000 0.276437 0.909878
Average Sequence Length 336.0000 0.080905 0.970550
Average hit length 309.0000 0.103558 0.958863
Number of Families 572.0000 0.428366 0.854430
Number of Unique Architectures 1516.0000 0.808775 0.690387
Percent with Assignment 69.0000 0.272205 0.891368
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 99.1400 99.140000 0.984119
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)