PQI

Roseobacter denitrificans OCh 114

Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter; Roseobacter denitrificans

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 8.0000 8.000000 0.791416
Percent of Sequences covered 66.0000 0.276110 0.894693
Number of Superfamilies 723.0000 0.048544 0.984935
Average Sequence Length 312.0000 0.085968 0.968734
Average hit length 297.0000 1.011307 0.569022
Number of Families 571.0000 0.636608 0.764506
Number of Unique Architectures 1138.0000 0.035374 0.989822
Percent with Assignment 69.0000 0.319253 0.872349
Percent of sequences in Uniprot 99.5200 99.520000 0.930090
DOGMA 97.0900 97.090000 0.905989
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)