PQI

Pediococcus pentosaceus ATCC 25745

Taxonomy: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus; Pediococcus pentosaceus

Source: NCBI

Compared to

Leuconostoc carnosum JB16 • Leuconostoc mesenteroides subsp. mesenteroides J18 • Leuconostoc gelidum JB7 • Lactobacillus paracasei subsp. paracasei 8700:2 • Lactobacillus casei LOCK919 • Lactobacillus casei W56 • Lactobacillus casei LC2W • Lactobacillus casei BD-II • Lactobacillus casei BL23 • Lactobacillus casei str. Zhang • Lactobacillus rhamnosus LOCK908 • Lactobacillus rhamnosus LOCK900 • Lactobacillus rhamnosus ATCC 8530 • Lactobacillus rhamnosus GG • Lactobacillus johnsonii N6.2 • Lactobacillus johnsonii DPC 6026 • Lactobacillus johnsonii NCC 533 • Lactobacillus salivarius UCC118 • Lactobacillus fermentum F-6 • Lactobacillus fermentum CECT 5716 • Lactobacillus amylovorus GRL 1112 • Lactobacillus reuteri TD1 • Lactobacillus reuteri I5007 • Lactobacillus reuteri JCM 1112 • Lactobacillus reuteri SD2112 • Lactobacillus plantarum 16 • Lactobacillus plantarum ZJ316 • Lactobacillus plantarum subsp. plantarum ST-III • Lactobacillus plantarum subsp. plantarum P-8 • Lactobacillus plantarum WCFS1 • Lactobacillus helveticus R0052 • Lactobacillus helveticus H10 • Lactobacillus helveticus CNRZ32 • Lactobacillus delbrueckii subsp. bulgaricus ND02 • Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 • Lactobacillus delbrueckii subsp. bulgaricus 2038 • Lactobacillus brevis KB290 • Lactobacillus acidophilus La-14 • Lactobacillus acidophilus NCFM • Pediococcus pentosaceus SL4 • Weissella koreensis KACC 15510 • Oenococcus oeni PSU-1 • Leuconostoc sp. C2 • Leuconostoc kimchii IMSNU 11154 • Leuconostoc citreum KM20 • Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 • Leuconostoc gasicomitatum LMG 18811 • Lactobacillus casei ATCC 334 • Lactobacillus kefiranofaciens ZW3 • Lactobacillus crispatus ST1 • Lactobacillus rhamnosus Lc 705 • Lactobacillus johnsonii FI9785 • Lactobacillus sanfranciscensis TMW 1.1304 • Lactobacillus salivarius CECT 5713 • Lactobacillus ruminis ATCC 27782 • Lactobacillus fermentum IFO 3956 • Lactobacillus amylovorus GRL1118 • Lactobacillus sakei subsp. sakei 23K • Lactobacillus reuteri DSM 20016 • Lactobacillus gasseri ATCC 33323 • Lactobacillus plantarum JDM1 • Lactobacillus helveticus DPC 4571 • Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 • Lactobacillus buchneri NRRL B-30929 • Lactobacillus buchneri • Lactobacillus brevis ATCC 367 • Lactobacillus acidophilus 30SC • Pediococcus claussenii ATCC BAA-344
PQI Score
User Score (1 vote)

Voting

Click on the stars to rate this proteome.

Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 65.0000 0.084366 0.969244
Number of Superfamilies 530.0000 0.149533 0.953869
Average Sequence Length 305.0000 0.148088 0.943616
Average hit length 285.0000 0.045297 0.982702
Number of Families 392.0000 0.524127 0.812137
Number of Unique Architectures 663.0000 0.045328 0.986878
Percent with Assignment 70.0000 0.344552 0.861871
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 88.0100 88.010000 0.749599
comments powered by Disqus

DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)