PQI

Thermococcus sibiricus MM 739

Taxonomy: Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus sibiricus

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 64.0000 1.241633 0.467698
Number of Superfamilies 509.0000 0.680925 0.753373
Average Sequence Length 273.0000 1.233678 0.442015
Average hit length 266.0000 0.324828 0.865207
Number of Families 365.0000 0.543726 0.803123
Number of Unique Architectures 678.0000 0.256283 0.918917
Percent with Assignment 65.0000 0.040745 0.984954
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 94.5700 94.570000 0.849079
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)