PQI

Pseudomonas syringae pv. syringae B728a

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; Pseudomonas syringae pv. syringae

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 66.0000 0.954275 0.586136
Number of Superfamilies 814.0000 0.106365 0.967162
Average Sequence Length 349.0000 2.534464 0.174262
Average hit length 321.0000 4.831223 0.159002
Number of Families 762.0000 0.383361 0.872335
Number of Unique Architectures 1364.0000 0.133477 0.959081
Percent with Assignment 72.0000 0.750438 0.669027
Percent of sequences in Uniprot 99.9200 99.920000 0.963395
DOGMA 99.1400 99.140000 0.984119
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)