PQI

Mannheimia succiniciproducens MBEL55E

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Basfia; Mannheimia succiniciproducens

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=221988

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 1.0000 1.000000 0.295321
Percent of Sequences covered 69.0000 1.138316 0.509254
Number of Superfamilies 651.0000 0.800278 0.707963
Average Sequence Length 291.0000 0.886994 0.596292
Average hit length 295.0000 1.195889 0.495678
Number of Families 656.0000 1.203588 0.550498
Number of Unique Architectures 862.0000 0.811541 0.689363
Percent with Assignment 68.0000 0.491465 0.792508
Percent of sequences in Uniprot 97.7700 97.770000 0.901421
DOGMA 97.0900 97.090000 0.905989
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)