PQI

Pseudomonas syringae pv. phaseolicola 1448A

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 2; Pseudomonas savastanoi; Pseudomonas syringae pv. phaseolicola

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 64.0000 0.848571 0.640698
Number of Superfamilies 807.0000 0.436296 0.853045
Average Sequence Length 329.0000 0.227467 0.910845
Average hit length 303.0000 0.546615 0.766448
Number of Families 754.0000 0.941887 0.647729
Number of Unique Architectures 1343.0000 0.588587 0.780435
Percent with Assignment 70.0000 0.175737 0.934350
Percent of sequences in Uniprot 99.6400 99.640000 0.936435
DOGMA 99.1400 99.140000 0.984119
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)