Populus trichocarpa v156

Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Source: JGI

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Populus trichocarpa, the black cottonwood, western balsam-poplar or California poplar, is a deciduous broadleaf tree species native to western North America. It is used for timber, and is notable as a model organism in plant biology. A high-coverage genome sequence was published in 2006 and was the first tree genome to be sequenced. Assembly of the genome is particularly difficult due to the tetraploidy of the species. However, long-read Pacbio sequencing enabled the assembly of all scaffolds in 2018.

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0010 0.001041 0.816106
CEG Domain Combination Homology 0.5403 0.540258 0.836933
Percent of Sequences covered 44.0000 0.067012 0.975747
Number of Superfamilies 974.0000 0.555216 0.806780
Average Sequence Length 383.0000 0.131217 0.949961
Average hit length 286.0000 0.251375 0.900420
Number of Families 814.0000 0.461115 0.838793
Number of Unique Architectures 3703.0000 0.214875 0.932014
Percent with Assignment 59.0000 0.027405 0.989523
Percent of sequences in Uniprot 98.3200 98.320000 0.907113
DOGMA 98.4400 98.440000 0.959061

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