PQI

Pseudomonas putida KT2440

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas putida

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 1.0000 1.000000 0.295321
Percent of Sequences covered 64.0000 0.778645 0.672095
Number of Superfamilies 813.0000 0.005335 0.998442
Average Sequence Length 333.0000 0.217564 0.915649
Average hit length 305.0000 0.169417 0.933156
Number of Families 762.0000 0.388382 0.869954
Number of Unique Architectures 1378.0000 0.121079 0.963195
Percent with Assignment 70.0000 0.156023 0.943978
Percent of sequences in Uniprot 99.7500 99.750000 0.943175
DOGMA 98.4600 98.460000 0.959325
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)