PQI

Pseudomonas fluorescens Pf0-1

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 66.0000 0.892289 0.615203
Number of Superfamilies 831.0000 1.306391 0.540191
Average Sequence Length 336.0000 0.541537 0.762950
Average hit length 308.0000 0.356798 0.852408
Number of Families 789.0000 1.321559 0.511653
Number of Unique Architectures 1437.0000 1.292924 0.506876
Percent with Assignment 71.0000 0.271771 0.891551
Percent of sequences in Uniprot 99.8000 99.800000 0.947980
DOGMA 99.4900 99.490000 0.991125
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)