PQI

Mannheimia haemolytica D174

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia haemolytica

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311760

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 0.0000 0.000000 0.000000
Percent of Sequences covered 62.0000 1.680564 0.327498
Number of Superfamilies 665.0000 1.148880 0.585569
Average Sequence Length 285.0000 1.189459 0.459725
Average hit length 283.0000 0.783216 0.663523
Number of Families 630.0000 0.516444 0.815366
Number of Unique Architectures 888.0000 1.098882 0.576181
Percent with Assignment 63.0000 1.588886 0.332777
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 97.0900 97.090000 0.905989
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)