PQI

Nanoarchaeum equitans Kin4-M

Taxonomy: Archaea; Nanoarchaeota; Nanoarchaeum; Nanoarchaeum equitans

Source: NCBI

Compared to

Caldisphaera lagunensis DSM 15908 • Aeropyrum camini SY1 = JCM 12091 • Sulfolobus islandicus LAL14/1 • Sulfolobus islandicus REY15A • Sulfolobus islandicus HVE10/4 • Sulfolobus islandicus Y.G.57.14 • Sulfolobus islandicus L.S.2.15 • Sulfolobus islandicus M.16.27 • Sulfolobus islandicus M.14.25 • Sulfolobus islandicus M.16.4 • Sulfolobus islandicus L.D.8.5 • Sulfolobus solfataricus 98/2 • Sulfolobus acidocaldarius SUSAZ • Sulfolobus acidocaldarius Ron12/I • Sulfolobus acidocaldarius N8 • Candidatus Korarchaeum cryptofilum OPF8 • Acidilobus saccharovorans 345-15 • Fervidicoccus fontis Kam940 • Pyrolobus fumarii 1A • Hyperthermus butylicus DSM 5456 • Thermogladius cellulolyticus 1633 • Ignisphaera aggregans DSM 17230 • Aeropyrum pernix K1 • Ignicoccus hospitalis KIN4/I • Thermosphaera aggregans DSM 11486 • Staphylothermus hellenicus DSM 12710 • Staphylothermus marinus F1 • Desulfurococcus fermentans DSM 16532 • Desulfurococcus kamchatkensis 1221n • Desulfurococcus mucosus DSM 2162 • Metallosphaera cuprina Ar-4 • Metallosphaera sedula DSM 5348 • Acidianus hospitalis W1 • Sulfolobus tokodaii str. 7 • Sulfolobus islandicus Y.N.15.51 • Sulfolobus solfataricus P2 • Sulfolobus acidocaldarius DSM 639 • Thermofilum sp. 1910b • Thermofilum pendens Hrk 5 • Vulcanisaeta moutnovskia 768-28 • Vulcanisaeta distributa DSM 14429 • Caldivirga maquilingensis IC-167 • Pyrobaculum sp. 1860 • Pyrobaculum calidifontis JCM 11548 • Pyrobaculum arsenaticum DSM 13514 • Pyrobaculum oguniense TE7 • Thermoproteus neutrophilus V24Sta • Pyrobaculum aerophilum str. IM2 • Pyrobaculum islandicum DSM 4184 • Thermoproteus uzoniensis 768-20 • Thermoproteus tenax Kra 1
PQI Score
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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 3.0000 3.000000 0.654145
Percent of Sequences covered 56.0000 2.318874 0.220976
Number of Superfamilies 228.0000 6.196125 0.201062
Average Sequence Length 280.0000 0.089745 0.967005
Average hit length 241.0000 3.719736 0.176265
Number of Families 82.0000 4.377120 0.199884
Number of Unique Architectures 258.0000 5.044445 0.184794
Percent with Assignment 64.0000 0.248131 0.902153
Percent of sequences in Uniprot 97.4100 97.410000 0.897480
DOGMA 40.8100 40.810000 0.379279
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)