PQI

Aggregatibacter actinomycetemcomitans ANH9381

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter actinomycetemcomitans

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 69.0000 1.013225 0.562078
Number of Superfamilies 620.0000 0.153630 0.952253
Average Sequence Length 297.0000 0.405874 0.831076
Average hit length 286.0000 0.331968 0.862177
Number of Families 585.0000 0.377778 0.874014
Number of Unique Architectures 811.0000 0.082376 0.975410
Percent with Assignment 71.0000 0.200426 0.924446
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 95.2100 95.210000 0.860482
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)