PQI

Actinobacillus suis H91-0380

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus; Actinobacillus suis

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=696748

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0003 0.000275 0.829987
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 67.0000 0.277508 0.893934
Number of Superfamilies 652.0000 0.758358 0.722896
Average Sequence Length 324.0000 1.264445 0.429908
Average hit length 295.0000 1.088893 0.537891
Number of Families 645.0000 0.836446 0.686841
Number of Unique Architectures 889.0000 1.135456 0.561823
Percent with Assignment 74.0000 0.918485 0.585800
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 97.2600 97.260000 0.909358
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)