PQI

Escherichia coli JJ1886

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; Escherichia coli

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1355100

Compared to

Shigella sonnei 53G • Shigella flexneri 2002017 • Shigella flexneri 2a str. 2457T • Shigella flexneri 2a str. 301 • Shigella dysenteriae 1617 • Shigella boydii Sb227 • Salmonella bongori N268-08 • Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 • Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 • Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 • Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 • Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050 • Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 • Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 • Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1 • Salmonella enterica subsp. enterica serovar Newport str. SL254 • Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 • Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921 • Salmonella enterica subsp. enterica serovar Typhimurium str. U288 • Salmonella enterica subsp. enterica serovar Typhimurium str. 798 • Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 • Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 • Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 • Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2 • Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 • Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 • Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S • Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 • Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104 • Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 • Salmonella enterica subsp. enterica serovar Typhi str. Ty21a • Salmonella enterica subsp. enterica serovar Typhi str. CT18 • Salmonella enterica subsp. enterica serovar Typhi str. Ty2 • Salmonella enterica serovar Bovismorbificans genomics • Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 • Salmonella enterica subsp. enterica serovar Agona str. 24249 • Salmonella enterica subsp. enterica serovar Agona str. SL483 • Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1 • Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 • Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 • Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 • Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069 • Salmonella enterica subsp. enterica serovar Heidelberg str. B182 • Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 • Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 • Salmonella enterica subsp. enterica serovar Pullorum str. S06004 • Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67 • Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078 • Salmonella enterica subsp. enterica serovar Thompson str. RM6836 • Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 • Escherichia coli E24377A • Escherichia coli E. coli PMV-1 • Escherichia coli LY180 • Escherichia coli APEC O78 • Escherichia coli O7:K1 str. CE10 • Escherichia coli O104:H4 str. 2009EL-2050 • Escherichia coli O104:H4 str. 2009EL-2071 • Escherichia coli O104:H4 str. 2011C-3493 • Escherichia coli NA114 • Escherichia coli P12b • Escherichia coli str. 'clone D i2' • Escherichia coli str. 'clone D i14' • Escherichia coli UM146 • Escherichia coli 042 • Escherichia coli Xuzhou21 • Escherichia coli IHE3034 • Escherichia coli UMNK88 • Escherichia coli O83:H1 str. NRG 857C • Escherichia coli ABU 83972 • Escherichia coli KO11FL • Escherichia coli LF82 • Escherichia coli ED1a • Escherichia coli IAI39 • Escherichia coli UMN026 • Escherichia coli 55989 • Escherichia coli S88 • Escherichia coli IAI1 • Escherichia coli W • Escherichia coli DH1 • Escherichia coli ATCC 8739 • Escherichia coli BL21(DE3) • Escherichia coli SMS-3-5 • Escherichia coli SE15 • Escherichia coli SE11 • Escherichia coli APEC O1 • Escherichia coli O103:H2 str. 12009 • Escherichia coli UTI89 • Escherichia coli 536 • Escherichia coli HS • Escherichia coli ETEC H10407 • Escherichia coli O55:H7 str. RM12579 • Escherichia coli O55:H7 str. CB9615 • Escherichia coli O26:H11 str. 11368 • Escherichia coli CFT073 • Escherichia coli O111:H- str. 11128 • Escherichia coli O127:H6 str. E2348/69 • Escherichia coli O157:H7 str. TW14359 • Escherichia coli O157:H7 str. EC4115 • Escherichia coli O157:H7 str. Sakai • Escherichia coli O157:H7 str. EDL933 • Escherichia coli str. K-12 substr. MDS42 • Escherichia coli BW2952 • Escherichia coli str. K-12 substr. MG1655 • Escherichia coli str. K-12 substr. W3110 • Escherichia coli str. K-12 substr. DH10B • Escherichia coli B str. REL606 • Shigella sonnei Ss046 • Shigella flexneri 5 str. 8401 • Shigella dysenteriae Sd197 • Shigella boydii CDC 3083-94 • Salmonella bongori NCTC 12419 • Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 • Escherichia fergusonii ATCC 35469 • Escherichia coli 'BL21-Gold(DE3)pLysS AG' • Citrobacter rodentium ICC168 • Citrobacter koseri ATCC BAA-895
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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0002 0.000196 0.832178
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 64.0000 0.180902 0.934367
Number of Superfamilies 854.0000 0.800682 0.707801
Average Sequence Length 304.0000 0.227173 0.911189
Average hit length 291.0000 0.384984 0.839793
Number of Families 1080.0000 0.936764 0.649892
Number of Unique Architectures 1311.0000 0.997775 0.615882
Percent with Assignment 67.0000 0.002721 0.998525
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 97.9500 97.950000 0.933516
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)