PQI

Gorilla gorilla 76_3.1

Taxonomy: Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla

Source: Ensembl

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0172 0.017221 0.679682
CEG Domain Combination Homology 0.5193 0.519324 0.734757
Percent of Sequences covered 43.0000 0.034333 0.988866
Number of Superfamilies 1089.0000 0.650889 0.766710
Average Sequence Length 535.0000 0.297728 0.879937
Average hit length 331.0000 0.980247 0.580829
Number of Families 1341.0000 0.743455 0.721588
Number of Unique Architectures 4984.0000 0.189713 0.940325
Percent with Assignment 70.0000 0.066958 0.976246
Percent of sequences in Uniprot 99.9600 99.960000 0.975192
DOGMA 100.0000 100.000000 1.000000
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)