PQI

Pseudomonas putida DOT-T1E

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas putida

Source: NCBI

Compared to

PQI Score
User Score

Voting

Click on the stars to rate this proteome.

Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 65.0000 0.055836 0.980718
Number of Superfamilies 811.0000 0.135777 0.958696
Average Sequence Length 318.0000 1.402676 0.378972
Average hit length 301.0000 0.869879 0.626789
Number of Families 764.0000 0.263627 0.917550
Number of Unique Architectures 1390.0000 0.353488 0.883004
Percent with Assignment 68.0000 1.028401 0.537718
Percent of sequences in Uniprot 99.9700 99.970000 0.979928
DOGMA 99.4900 99.490000 0.991125
comments powered by Disqus

DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)