PQI

Pseudomonas putida BIRD-1

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas putida

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 66.0000 0.892289 0.615203
Number of Superfamilies 803.0000 0.703022 0.743833
Average Sequence Length 334.0000 0.324266 0.867983
Average hit length 304.0000 0.343472 0.857647
Number of Families 766.0000 0.139078 0.957770
Number of Unique Architectures 1327.0000 0.870655 0.666386
Percent with Assignment 73.0000 1.151722 0.482961
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 99.1400 99.140000 0.984119
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)