PQI

Pseudomonas putida ND6

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas putida

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 3.0000 3.000000 0.654145
Percent of Sequences covered 63.0000 1.624644 0.342113
Number of Superfamilies 823.0000 0.725683 0.735068
Average Sequence Length 295.0000 4.444380 0.110805
Average hit length 304.0000 0.336520 0.860162
Number of Families 782.0000 0.862654 0.678099
Number of Unique Architectures 1397.0000 0.502791 0.820034
Percent with Assignment 61.0000 4.729463 0.127807
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 99.6600 99.660000 0.995116
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)