PQI

Pseudomonas fluorescens F113

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens

Source: NCBI

Compared to

Pseudomonas denitrificans ATCC 13867 • Pseudomonas syringae pv. phaseolicola 1448A • Pseudomonas syringae pv. syringae B728a • Pseudomonas monteilii SB3101 • Pseudomonas monteilii SB3078 • Pseudomonas putida H8234 • Pseudomonas putida HB3267 • Pseudomonas putida NBRC 14164 • Pseudomonas putida DOT-T1E • Pseudomonas putida S16 • Pseudomonas putida BIRD-1 • Pseudomonas putida W619 • Pseudomonas putida ND6 • Pseudomonas putida KT2440 • Pseudomonas putida GB-1 • Pseudomonas protegens CHA0 • Pseudomonas poae RE*1-1-14 • Pseudomonas fluorescens A506 • Pseudomonas fluorescens R124 • Pseudomonas fluorescens Pf0-1 • Pseudomonas resinovorans NBRC 106553 • Pseudomonas mendocina NK-01 • Pseudomonas aeruginosa SCV20265 • Pseudomonas aeruginosa MTB-1 • Pseudomonas aeruginosa LES431 • Pseudomonas aeruginosa RP73 • Pseudomonas aeruginosa B136-33 • Pseudomonas aeruginosa PA1R • Pseudomonas aeruginosa PA1 • Pseudomonas aeruginosa DK2 • Pseudomonas aeruginosa NCGM2.S1 • Pseudomonas aeruginosa M18 • Pseudomonas aeruginosa LESB58 • Pseudomonas aeruginosa PA7 • Pseudomonas aeruginosa PAO1 • Pseudomonas sp. TKP • Pseudomonas sp. UW4 • Pseudomonas brassicacearum subsp. brassicacearum NFM421 • Pseudomonas entomophila L48 • Pseudomonas syringae pv. tomato str. DC3000 • Pseudomonas fulva 12-X • Pseudomonas putida F1 • Pseudomonas protegens Pf-5 • Pseudomonas fluorescens SBW25 • Pseudomonas mendocina ymp • Pseudomonas aeruginosa UCBPP-PA14 • Pseudomonas sp. VLB120
PQI Score
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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 65.0000 0.033634 0.989874
Number of Superfamilies 832.0000 1.053515 0.615561
Average Sequence Length 337.0000 0.855719 0.610912
Average hit length 301.0000 0.649815 0.720276
Number of Families 783.0000 0.224907 0.930856
Number of Unique Architectures 1453.0000 1.582313 0.418922
Percent with Assignment 73.0000 1.182727 0.470242
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 99.4900 99.490000 0.991125
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)