PQI

Pasteurella multocida subsp. multocida str. 3480

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella; Pasteurella multocida; Pasteurella multocida subsp. multocida

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0009 0.000859 0.818929
PubMed Publication Count 0.0000 0.000000 0.000000
Percent of Sequences covered 65.0000 0.496520 0.803144
Number of Superfamilies 650.0000 0.692341 0.748699
Average Sequence Length 315.0000 0.655697 0.709210
Average hit length 292.0000 0.591253 0.747035
Number of Families 635.0000 0.621738 0.771042
Number of Unique Architectures 860.0000 0.703334 0.732186
Percent with Assignment 70.0000 0.001890 0.999091
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 97.0900 97.090000 0.905989
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)