PQI

Aggregatibacter actinomycetemcomitans D11S-1

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter actinomycetemcomitans

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=668336

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0005 0.000471 0.824856
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 65.0000 0.601984 0.755193
Number of Superfamilies 624.0000 0.031327 0.990236
Average Sequence Length 281.0000 1.406190 0.377765
Average hit length 279.0000 1.410389 0.421147
Number of Families 591.0000 0.249510 0.922813
Number of Unique Architectures 818.0000 0.181805 0.943203
Percent with Assignment 66.0000 0.897606 0.596610
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 95.3800 95.380000 0.863622
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)