PQI

Pseudomonas putida NBRC 14164

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1211579

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 66.0000 0.892289 0.615203
Number of Superfamilies 816.0000 0.217058 0.930347
Average Sequence Length 333.0000 0.217564 0.915649
Average hit length 306.0000 0.004380 0.998496
Number of Families 760.0000 0.513442 0.816638
Number of Unique Architectures 1376.0000 0.082393 0.975338
Percent with Assignment 72.0000 0.710393 0.688858
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 99.6600 99.660000 0.995116
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)