PQI

Bibersteinia trehalosi USDA-ARS-USMARC-192

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Bibersteinia; Bibersteinia trehalosi

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1171377

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 0.0000 0.000000 0.000000
Percent of Sequences covered 66.0000 0.226455 0.913760
Number of Superfamilies 650.0000 0.818411 0.701796
Average Sequence Length 319.0000 1.003362 0.541533
Average hit length 293.0000 0.770522 0.668426
Number of Families 635.0000 0.732357 0.726014
Number of Unique Architectures 857.0000 0.788064 0.697973
Percent with Assignment 72.0000 0.420199 0.826057
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 97.2600 97.260000 0.909358
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)