PQI

Pseudomonas poae RE*1-1-14

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas poae

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1282356

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 1.0000 1.000000 0.295321
Percent of Sequences covered 65.0000 0.048427 0.984230
Number of Superfamilies 795.0000 1.381363 0.519289
Average Sequence Length 337.0000 0.675496 0.700381
Average hit length 309.0000 0.563598 0.758769
Number of Families 744.0000 1.684081 0.405451
Number of Unique Architectures 1323.0000 1.003409 0.613730
Percent with Assignment 71.0000 0.276606 0.889585
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 99.3200 99.320000 0.988006
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)