PQI

Pseudomonas fluorescens R124

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens

Source: http://patricbrc.org/portal/portal/patric/Genome?cType=genome&cId=147482

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
Percent of Sequences covered 64.0000 0.801467 0.662480
Number of Superfamilies 832.0000 1.406610 0.511422
Average Sequence Length 325.0000 0.634577 0.718719
Average hit length 304.0000 0.339785 0.858961
Number of Families 781.0000 0.810141 0.697173
Number of Unique Architectures 1401.0000 0.570055 0.788406
Percent with Assignment 69.0000 0.594640 0.746095
Percent of sequences in Uniprot 88.4900 88.490000 0.831925
DOGMA 98.9700 98.970000 0.979887
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)