PQI

Pseudomonas protegens CHA0

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas protegens

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1124983

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 0.0000 0.000000 0.000000
Percent of Sequences covered 66.0000 0.899218 0.611742
Number of Superfamilies 825.0000 0.854251 0.688201
Average Sequence Length 332.0000 0.128747 0.951352
Average hit length 308.0000 0.383998 0.840333
Number of Families 794.0000 1.629352 0.418992
Number of Unique Architectures 1459.0000 1.720967 0.383339
Percent with Assignment 71.0000 0.281309 0.887782
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 98.9700 98.970000 0.979887
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)