PQI

Actinobacillus pleuropneumoniae serovar 3 str. JL03

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus; Actinobacillus pleuropneumoniae; Actinobacillus pleuropneumoniae serovar 3

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 68.0000 0.591998 0.759617
Number of Superfamilies 635.0000 0.335209 0.889237
Average Sequence Length 314.0000 0.651851 0.711212
Average hit length 289.0000 0.140741 0.944111
Number of Families 627.0000 0.547126 0.801814
Number of Unique Architectures 814.0000 0.150716 0.953416
Percent with Assignment 74.0000 0.865708 0.614639
Percent of sequences in Uniprot 99.9500 99.950000 0.971280
DOGMA 94.8600 94.860000 0.853429
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)