PQI

Haemophilus somnus 2336

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Histophilus; Histophilus somni

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 0.0000 0.000000 0.000000
Percent of Sequences covered 62.0000 1.854442 0.288103
Number of Superfamilies 611.0000 0.429369 0.855492
Average Sequence Length 332.0000 1.779849 0.273333
Average hit length 299.0000 1.666642 0.349194
Number of Families 584.0000 0.399183 0.865561
Number of Unique Architectures 781.0000 0.343900 0.886519
Percent with Assignment 69.0000 0.236569 0.908834
Percent of sequences in Uniprot 99.9100 99.910000 0.961774
DOGMA 96.5800 96.580000 0.889129
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)