PQI

Pseudomonas putida GB-1

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas putida

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 0.0000 0.000000 0.000000
Percent of Sequences covered 65.0000 0.055836 0.980718
Number of Superfamilies 816.0000 0.217058 0.930347
Average Sequence Length 334.0000 0.324266 0.867983
Average hit length 306.0000 0.004380 0.998496
Number of Families 765.0000 0.201333 0.938472
Number of Unique Architectures 1358.0000 0.265849 0.915248
Percent with Assignment 71.0000 0.275881 0.889913
Percent of sequences in Uniprot 99.9700 99.970000 0.979928
DOGMA 99.4900 99.490000 0.991125
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)