PQI

Aggregatibacter actinomycetemcomitans D7S-1

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter actinomycetemcomitans

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0003 0.000301 0.829158
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 64.0000 0.894044 0.614080
Number of Superfamilies 613.0000 0.425470 0.856665
Average Sequence Length 296.0000 0.512192 0.777409
Average hit length 287.0000 0.172384 0.932187
Number of Families 589.0000 0.345842 0.885733
Number of Unique Architectures 815.0000 0.073039 0.978294
Percent with Assignment 66.0000 0.907693 0.591861
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 95.0300 95.030000 0.856809
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)