PQI

Haemophilus influenzae PittGG

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus influenzae

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0002 0.000212 0.831557
PubMed Publication Count 4.0000 4.000000 0.711784
Percent of Sequences covered 68.0000 0.596619 0.757691
Number of Superfamilies 581.0000 1.397905 0.514337
Average Sequence Length 284.0000 1.275790 0.425526
Average hit length 275.0000 2.220994 0.249596
Number of Families 543.0000 1.325429 0.510358
Number of Unique Architectures 700.0000 1.570290 0.422179
Percent with Assignment 71.0000 0.179735 0.932839
Percent of sequences in Uniprot 99.9500 99.950000 0.971280
DOGMA 84.5900 84.590000 0.713026
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)