PQI

Actinobacillus succinogenes 130Z

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus; Actinobacillus succinogenes

Source: NCBI

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 0.0000 0.000000 0.000000
Percent of Sequences covered 70.0000 1.563718 0.358743
Number of Superfamilies 650.0000 0.728573 0.733853
Average Sequence Length 326.0000 1.471495 0.355521
Average hit length 298.0000 1.697025 0.341781
Number of Families 655.0000 1.109940 0.582604
Number of Unique Architectures 863.0000 0.786073 0.699058
Percent with Assignment 77.0000 1.751395 0.291298
Percent of sequences in Uniprot 99.9700 99.970000 0.979928
DOGMA 96.9200 96.920000 0.901746
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)