PQI

Mannheimia haemolytica USDA-ARS-USMARC-185

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia haemolytica

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1249526

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 65.0000 0.499164 0.801547
Number of Superfamilies 661.0000 1.035702 0.622086
Average Sequence Length 295.0000 0.574144 0.748253
Average hit length 286.0000 0.325680 0.864711
Number of Families 632.0000 0.561674 0.796062
Number of Unique Architectures 891.0000 1.152796 0.555263
Percent with Assignment 67.0000 0.678237 0.705855
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 97.0900 97.090000 0.905989
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)