PQI

Mannheimia haemolytica USDA-ARS-USMARC-183

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia haemolytica

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1249531

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 63.0000 1.281398 0.452581
Number of Superfamilies 666.0000 1.179503 0.576430
Average Sequence Length 287.0000 1.065026 0.513780
Average hit length 282.0000 0.937042 0.598984
Number of Families 636.0000 0.642817 0.762194
Number of Unique Architectures 895.0000 1.198383 0.539167
Percent with Assignment 64.0000 1.357810 0.403994
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 97.2600 97.260000 0.909358
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)