PQI

Pseudomonas putida H8234

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida

Source: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1331671

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Proteome Quality Index Information

Scoring Method Raw Score Metric Rating
X content 0.0000 0.000000 1.000000
PubMed Publication Count 2.0000 2.000000 0.456269
Percent of Sequences covered 63.0000 1.676997 0.328459
Number of Superfamilies 811.0000 0.141531 0.956495
Average Sequence Length 311.0000 2.279937 0.194802
Average hit length 304.0000 0.345064 0.856885
Number of Families 771.0000 0.166977 0.949143
Number of Unique Architectures 1391.0000 0.371372 0.876719
Percent with Assignment 64.0000 3.080573 0.163979
Percent of sequences in Uniprot 100.0000 100.000000 1.000000
DOGMA 99.6600 99.660000 0.995116
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DOGMA is a contribution to PQI from the Bornberglab. Please cite: Elias Dohmen, Lukas P.M. Kremer, Erich Bornberg-Bauer, and Carsten Kemena (2016) DOGMA: domain-based transcriptome and proteome quality assessment. Bioinformatics doi:10.1093/bioinformatics/btw231.

PQI is a project of the Computational Genomics Group at the University of Bristol. Please cite: Zaucha, J., Stahlhacke, J., Oates, M.E., Thurlby, N., Rackham, O.J.L., Fang, H., Smithers, B. and Gough, J. (2014) A Proteome Quality Index. Env. Microbiology doi:10.1111/1462-2920.12622. (PDF)